- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.80:Lysozyme-like
- Homology: 3.40.80.10:Peptidoglycan recognition protein-like
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1aro | [AB] | [AB] | [AB] | 2.8 | HG:MERCURY (II) ION | |||
1j3g | [A] | [A] | [A] | NOTAPPLICABLE. | ZN:ZINC ION | |||
1lba | [A] | [A] | [A] | 2.2 | ZN:ZINC ION | |||
1oht | [A] | [A] | [A] | 2 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE TLA:L(+)-TARTARIC ACID ZN:ZINC ION | |||
1s2j | [A] | [A] | [A] | 2.2 | PO4:PHOSPHATE ION | |||
1sk3 | [A] | [A] | [A] | 2.8 | NI:NICKEL (II) ION SO4:SULFATE ION | |||
1sk4 | [A] | [A] | [A] | 1.65 | CSO:S-HYDROXYCYSTEINE NA:SODIUM ION | |||
1sxr | [A] | [A] | [A] | 1.56 | EDO:1,2-ETHANEDIOL SO4:SULFATE ION | |||
1twq | [A][a] | [A][a] | [A][a] | 2.3 | AMU:N-ACETYL-BETA-MURAMIC ACID GMA:4-AMIDO-4-CARBAMOYL-BUTYRIC ACID NH2:AMINO GROUP NI:NICKEL (II) ION | |||
1yb0 | [A3] | [A3] | [A3] | 1.86 | PO4:PHOSPHATE ION ZN:ZINC ION | |||
1yck | [A] | [A] | [A] | 1.7 | ||||
1z6i | [A] | [A] | [A] | 2.5 | NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
2aph | [A][a] | [A][a] | [A][a] | 2.1 | AMU:N-ACETYL-BETA-MURAMIC ACID DAL:D-ALANINE GMA:4-AMIDO-4-CARBAMOYL-BUTYRIC ACID NH2:AMINO GROUP SO4:SULFATE ION | |||
2ar3 | [A3] | [A3] | [A3] | 2.2 | PO4:PHOSPHATE ION ZN:ZINC ION | |||
2bh7 | [A2] | [A2] | [A2] | 2.2 | MSE:SELENOMETHIONINE SO4:SULFATE ION ZN:ZINC ION | |||
2cb3 | [A] | [A] | [A] | 2.4 | GOL:GLYCEROL MLD:GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA | |||
2eav | [A2] | [A2] | [A2] | 2.2 | NI:NICKEL (II) ION | |||
2eax | [A3][a] | [A3][a] | [A3][a] | 2.1 | AMV:METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE DAL:D-ALANINE FGA:GAMMA-D-GLUTAMIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
2f2l | [AB] | [AB] | [A2] | 2.1 | CIT:CITRIC ACID CSO:S-HYDROXYCYSTEINE HSQ:2-ACETYLAMINO-2-DEOXY-ALPHA-L-IDOPYRANOSE MLD:GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
2l47 | [A] | [A] | [A] | NOTAPPLICABLE. | ZN:ZINC ION | |||
2r2k | [A4] | [A4] | [A4] | 3.25 | NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
2r90 | [A4] | [A4] | [A4] | 2.8 | ||||
2rkq | [A] | [A] | [A] | 1.5 | ||||
2wkx | [A2] | [A2] | [A2] | 1.8 | CL:CHLORIDE ION GOL:GLYCEROL ZN:ZINC ION | |||
2xz4 | [A] | [A] | [A] | 1.72 | 1PG:2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL CU:COPPER (II) ION EDO:1,2-ETHANEDIOL | |||
2xz8 | [A2] | [A2] | [A2] | 1.94 | NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL | |||
2y28 | [A] | [A] | [A] | 1.8 | MSE:SELENOMETHIONINE ZN:ZINC ION | |||
2y2b | [A] | [A] | [A] | 1.9 | AH0:2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID MHI:L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID ZN:ZINC ION | |||
2y2c | [A] | [A] | [A] | 1.8 | ||||
2y2d | [A] | [A] | [A] | 2 | ZN:ZINC ION | |||
2y2e | [A] | [A] | [A] | 2 | ZN:ZINC ION | |||
2z9n | [A4] | [A4] | [A4] | 3.2 | TLA:L(+)-TARTARIC ACID | |||
3c2x | [A2] | [A2] | [A2] | 1.83 | GOL:GLYCEROL SO4:SULFATE ION TLA:L(+)-TARTARIC ACID | |||
3cg9 | [A4] | [A4] | [A4] | 2.9 | RAM:ALPHA-L-RHAMNOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3cor | [A4] | [A4] | [A4] | 3.1 | NGA:2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3cxa | [A4] | [A4] | [A4] | 3.4 | GLC:ALPHA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3d2y | [A][a] | [A][a] | [A][a] | 1.75 | AH0:2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID FGA:GAMMA-D-GLUTAMIC ACID GOL:GLYCEROL | |||
3d2z | [A][a] | [A][a] | [A][a] | 2.8 | CL:CHLORIDE ION FGA:GAMMA-D-GLUTAMIC ACID ZN:ZINC ION | |||
3ep1 | [A2] | [A2] | [A2] | 2.1 | ||||
3hmb | [A] | [A] | [A] | 2.7 | ZN:ZINC ION | |||
3lat | [A] | [A] | [A] | 1.7 | BU1:1,4-BUTANEDIOL CL:CHLORIDE ION IMD:IMIDAZOLE ZN:ZINC ION | |||
3ng4 | [A4] | [A4] | [A4] | 1.73 | GLC:ALPHA-D-GLUCOPYRANOSE GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SRT:S,R MESO-TARTARIC ACID | |||
3nno | [A4] | [A4] | [A4] | 2.9 | RAM:ALPHA-L-RHAMNOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3nw3 | [A4] | [A4] | [A4] | 2.5 | ALA:ALANINE DGN:D-GLUTAMINE GOL:GLYCEROL LAC:LACTIC ACID NDG:2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3o4k | [A4] | [A4] | [A4] | 2.11 | GOL:GLYCEROL LTC:(2S)-1-({3-O-[2-(ACETYLAMINO)-4-AMINO-2,4,6-TRIDEOXY-BETA-D-GALACTOPYRANOSYL]-ALPHA-D-GLUCOPYRANOSYL}OXY)-3-(HEPTANOYLOXY)PROPAN-2-YL (7Z)-PENTADEC-7-ENOATE TLA:L(+)-TARTARIC ACID | |||
3ogx | [A4] | [A4] | [A4] | 2.8 | GOL:GLYCEROL SGN:2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID UAP:4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENOPYRANURONICACID | |||
3qj1 | [A4] | [A4] | [A4] | 3.2 | GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER TLA:L(+)-TARTARIC ACID | |||
3qs0 | [A4] | [A4] | [A4] | 2.5 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
3qv4 | [A4] | [A4] | [A4] | 2.7 | ALA:ALANINE DGL:D-GLUTAMIC ACID EDO:1,2-ETHANEDIOL GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PEG:DI(HYDROXYETHYL)ETHER SRT:S,R MESO-TARTARIC ACID | |||
3rdr | [A] | [A] | [A] | 2.2 | CL:CHLORIDE ION ZN:ZINC ION | |||
3rt4 | [A4] | [A4] | [A4] | 1.7 | LP5:(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE TLA:L(+)-TARTARIC ACID | |||
3t2v | [A4] | [A4] | [A4] | 2.51 | GOL:GLYCEROL KKJ:(2S,3R)-2-HEXYL-3-HYDROXYNONANOIC ACID TLA:L(+)-TARTARIC ACID | |||
3t39 | [A4] | [A4] | [A4] | 2.7 | GOL:GLYCEROL SKM:(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLICACID SRT:S,R MESO-TARTARIC ACID | |||
3tru | [A4] | [A4] | [A4] | 3.2 | GOL:GLYCEROL ISJ:(3R,4R)-3-[(1-CARBOXYETHENYL)OXY]-4-HYDROXYCYCLOHEXA-1,5-DIENE-1-CARBOXYLIC ACID TLA:L(+)-TARTARIC ACID | |||
3uil | [A4] | [A4] | [A4] | 2.2 | DAO:LAURIC ACID GOL:GLYCEROL | |||
3uml | [A4] | [A4] | [A4] | 2.15 | GOL:GLYCEROL ISJ:(3R,4R)-3-[(1-CARBOXYETHENYL)OXY]-4-HYDROXYCYCLOHEXA-1,5-DIENE-1-CARBOXYLIC ACID | |||
3umq | [A4] | [A4] | [A4] | 2.2 | BUA:BUTANOIC ACID GOL:GLYCEROL | |||
3usx | [A4] | [A4] | [A4] | 2.28 | GOL:GLYCEROL MYR:MYRISTIC ACID | |||
4bj4 | [A2] | [A2] | [A2] | 1.72 | FLC:CITRATE ANION | |||
4bol | [A2] | [A2] | [A2] | 1.7 | J0J:D-ALANYL-N-[(2S,6R)-6-AMINO-6-CARBOXY-1-{[(1R)-1-CARBOXYETHYL]AMINO}-1-OXOHEXAN-2-YL]-D-GLUTAMINE ZN:ZINC ION | |||
4bpa | [A2] | [A2] | [A2] | 2.7 | AMU:N-ACETYL-BETA-MURAMIC ACID AMV:METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4bxd | [A2][a2] | [A2][a2] | [A2][a2] | 3.1 | 6CL:6-CARBOXYLYSINE DAL:D-ALANINE FGA:GAMMA-D-GLUTAMIC ACID MAG:METHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4bxe | [A4][a4] | [A4][a4] | [A4][a4] | 2.95 | ACT:ACETATE ION AH0:2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID API:2,6-DIAMINOPIMELIC ACID DAL:D-ALANINE DGL:D-GLUTAMIC ACID PEG:DI(HYDROXYETHYL)ETHER | |||
4bxj | [A4] | [A4] | [A4] | 2.35 | GOL:GLYCEROL | |||
4fnn | [A4] | [A4] | [A4] | 2.24 | STE:STEARIC ACID | |||
4gf9 | [A4] | [A4] | [A4] | 2.8 | GOL:GLYCEROL LP5:(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE STE:STEARIC ACID | |||
4ivv | [A] | [A] | [A] | 1.05 | EDO:1,2-ETHANEDIOL ZN:ZINC ION | |||
4knk | [A] | [A] | [A] | 1.12 | EDO:1,2-ETHANEDIOL FMT:FORMIC ACID IMD:IMIDAZOLE NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER ZN:ZINC ION | |||
4knl | [A] | [A] | [A] | 1.55 | ALY:N(6)-ACETYLLYSINE DAL:D-ALANINE FMT:FORMIC ACID IMD:IMIDAZOLE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MUB:N-ACETYL-ALPHA-MURAMIC ACID NA:SODIUM ION NH2:AMINO GROUP OXM:OXAMIC ACID TAR:D(-)-TARTARIC ACID ZGL:D-ALPHA-GLUTAMINE | |||
4ols | [A] | [A] | [A] | 2.27 | FE:FE (III) ION MG:MAGNESIUM ION ZN:ZINC ION | |||
4opp | [A4] | [A4] | [A4] | 2.3 | 11Z:11-CYCLOHEXYLUNDECANOIC ACID GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
4orv | [A2] | [A2] | [A2] | 2.5 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID XXC:7-PHENYLHEPTANOIC ACID | |||
4oug | [A2] | [A2] | [A2] | 2.46 | GOL:GLYCEROL LP5:(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE PLM:PALMITIC ACID TLA:L(+)-TARTARIC ACID | |||
4q8s | [A2] | [A2] | [A2] | 2.09 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PNR:4-NITROPHENYL HEXADECANOATE TLA:L(+)-TARTARIC ACID | |||
4q9e | [A2] | [A2] | [A2] | 2.31 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID XXH:4-NITROBENZALDEHYDE | |||
4x36 | [A2] | [A2] | [A2] | 2.1 | CHT:CHOLINE ION GOL:GLYCEROL MSE:SELENOMETHIONINE ZN:ZINC ION | |||
4z8i | [A] | [A] | [A] | 2.7 | ZN:ZINC ION | |||
4zxm | [A] | [A] | [A] | 2.8 | ||||
5ctv | [A][a2] | [A][a2] | [A][a2] | 1.05 | AMV:METHYL 2-ACETAMIDO-3-O-[(1R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSIDE DAL:D-ALANINE DGL:D-GLUTAMIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
5dwf | [A] | [A] | [A] | 1.83 | EDO:1,2-ETHANEDIOL GOL:GLYCEROL TLA:L(+)-TARTARIC ACID | |||
5e0a | [A4] | [A4] | [A4] | 2.6 | NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TLA:L(+)-TARTARIC ACID | |||
5e0b | [A2] | [A2] | [A2] | 2.6 | AMU:N-ACETYL-BETA-MURAMIC ACID GOL:GLYCEROL TLA:L(+)-TARTARIC ACID | |||
5xgy | [A4] | [A4] | [A4] | 2.45 | GOL:GLYCEROL TLA:L(+)-TARTARIC ACID | |||
5xz3 | [A] | [A] | [A] | 1.86 | SO4:SULFATE ION | |||
5xz4 | [A] | [A] | [A] | 1.41 | SO4:SULFATE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
6a89 | [A2] | [A2] | [A2] | 2.11 | API:2,6-DIAMINOPIMELIC ACID EDO:1,2-ETHANEDIOL GOL:GLYCEROL RIB:ALPHA-D-RIBOFURANOSE TLA:L(+)-TARTARIC ACID | |||
6idm | [A4] | [A4] | [A4] | 3.2 | TLA:L(+)-TARTARIC ACID | |||
6j3w | [A2] | [A2] | [A2] | 2.07 | 6NA:HEXANOIC ACID ACT:ACETATE ION EDO:1,2-ETHANEDIOL TLA:L(+)-TARTARIC ACID | |||
6jve | [A2] | [A2] | [A2] | 2.28 | 6NA:HEXANOIC ACID ACT:ACETATE ION CL:CHLORIDE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER TLA:L(+)-TARTARIC ACID | |||
6jx8 | [A2] | [A2] | [A2] | 2.67 | 6NA:HEXANOIC ACID ACT:ACETATE ION CL:CHLORIDE ION EDO:1,2-ETHANEDIOL GOL:GLYCEROL TLA:L(+)-TARTARIC ACID |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA